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Preclinical MRI


MRI is a non-invasive technique and completely free of ionizing radiation. It is based on the response of the sample to radio waves when it is placed in a permanent strong magnetic field. In our case this is 9.4 T, which is about 188 000 times stronger than the earth magnetic field. 

Most commonly the signal in the image comes from the water in the tissue, but also for instance lipids or metabolites can be imaged. The great advantage of MRI is that it requires no contrast agent as the molecular environment of the tissue water gives rise to contrast by itself. Contrast agents can be used and often function as tracers, for instance in the study of cerebral blood flow. The disadvantage of MRI is the low signal and this is why a high magnetic field is required to create a strong polarisation. Nevertheless, imaging times lie in the typical range of 1-10 minutes.

Our system is adapted for scanning mouse and rats and can be used for both in and ex vivo imaging. Samples are possible up to 8 cm radius. In vivo imaging can be synchronised with respiratory and cardiac motion to enable imaging of the abdomen and heart. Retrospective triggering is also possible using specialised MR techniques. Respiration and temperature are continuously monitored using an SA Instruments animal monitoring system. In vivo experiments are performed under anaesthesia, most commonly with isoflurane.

Instrument specifications 

Preclinical MRI
Front view of animal positioning equipment and magnet. Horizontal view through the mouse head in vivo with T2-weighted imaging.


Bruker BioSpec Avance NEO

System SpecificationsDetails
Magnetic Field9.4T
Bore Size30 cm
GradientBGA-12S-HP
Max gradient strength681 mT/m
Spatial resolution0.02-100 mm
SoftwareParaVision 360 3.7

 

Radio frequency coils

CoilApplication(s)
Transmit-only 87 mm quadrature  All-purpose transmit
Transmit-receive 72 mm quadratureRat body 
Transmit-receive 40 mm quadratureRat head, mouse body
Transmit-receive 35 mm quadratureMouse body
Transmit-receive quadrature cryo-coil Mouse head
Mouse brain 2x2 phased array receive-onlyMouse head
Rat brain 2x2 phased array receive-onlyRat head
Surface 20 mm receive-onlyRat head, mouse cardiac, xenografts
Surface 15 mm receive-onlyMouse head, mouse cardiac, xenografts
Surface 10 mm receive-onlyMouse head, xenografts

 

FUS Instruments RK-50

Schematic diagram of the procedure to open up the blood-brain barrier with MRI-guided focused ultra sound.
Schematic of MRI-guided focused ultrasound for opening the blood-brain barrier. From left to right: calibration, animal positioning, focused ultrasound application and imaging result. Bright circular spots indicate blood-brain barrier opening.

 

SpecificationValue
Stereotactic frameMice, rats
Transducers (transcranial)1.65 MHz (mouse), 1.20 MHz (rat)
SoftwareAUREUS

 

Transducers

Transducer frequencyFUS lateral resolutionFUS axial resolution
1.65 MHz0.9 mm5.0 mm
1.20 MHz1.2 mm6.8 mm